GWAS-related eQTLs across different cancer types
We identified 337,131 eQTLs that overlap with GWAS linkage disequilibrium (LD) regions (r² ≥ 0.5).
|
Cancer type
|
eQTL type
|
tagSNP
|
Gene position (hg19)
|
p-value
|
|||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| THCA | cis | rs7267979 | 1 | rs6115146 | chr20:25304507 | PYGB | chr20:25228706-25278647:+ | 0.16 | 4.05 | 5.93E-5 | Liver enzyme levels (alkaline phosphatase) |
| THCA | cis | rs7267979 | 1 | rs6115153 | chr20:25325567 | ENTPD6 | chr20:25176339-25207360:+ | 0.32 | 7.29 | 1.31E-12 | Liver enzyme levels (alkaline phosphatase) |
| THCA | cis | rs7267979 | 1 | rs6115153 | chr20:25325567 | FAM182A | chr20:26035250-26067552:+ | 0.18 | 3.39 | 0.000746 | Liver enzyme levels (alkaline phosphatase) |
| THCA | cis | rs7267979 | 1 | rs6115153 | chr20:25325567 | FAM182B | chr20:25744102-25848786:- | -0.26 | -5.44 | 8.59E-8 | Liver enzyme levels (alkaline phosphatase) |
| THCA | cis | rs7267979 | 1 | rs6115153 | chr20:25325567 | NINL | chr20:25433338-25566153:- | 0.34 | 7.13 | 3.83E-12 | Liver enzyme levels (alkaline phosphatase) |
| THCA | cis | rs7267979 | 1 | rs6115153 | chr20:25325567 | PYGB | chr20:25228706-25278647:+ | 0.17 | 4.21 | 3.08E-5 | Liver enzyme levels (alkaline phosphatase) |
| THCA | cis | rs7267979 | 1 | rs6115159 | chr20:25350944 | ENTPD6 | chr20:25176339-25207360:+ | 0.32 | 7.23 | 1.88E-12 | Liver enzyme levels (alkaline phosphatase) |
| THCA | cis | rs7267979 | 1 | rs6115159 | chr20:25350944 | FAM182A | chr20:26035250-26067552:+ | 0.19 | 3.49 | 0.000536 | Liver enzyme levels (alkaline phosphatase) |
| THCA | cis | rs7267979 | 1 | rs6115159 | chr20:25350944 | FAM182B | chr20:25744102-25848786:- | -0.26 | -5.4 | 1.06E-7 | Liver enzyme levels (alkaline phosphatase) |
| THCA | cis | rs7267979 | 1 | rs6115159 | chr20:25350944 | NINL | chr20:25433338-25566153:- | 0.33 | 6.9 | 1.7E-11 | Liver enzyme levels (alkaline phosphatase) |
| THCA | cis | rs7267979 | 1 | rs6115159 | chr20:25350944 | PYGB | chr20:25228706-25278647:+ | 0.16 | 4.03 | 6.5E-5 | Liver enzyme levels (alkaline phosphatase) |
| THCA | cis | rs7267979 | 1 | rs6115168 | chr20:25372891 | ENTPD6 | chr20:25176339-25207360:+ | 0.32 | 7.23 | 1.88E-12 | Liver enzyme levels (alkaline phosphatase) |
| THCA | cis | rs7267979 | 1 | rs6115168 | chr20:25372891 | FAM182A | chr20:26035250-26067552:+ | 0.19 | 3.49 | 0.000536 | Liver enzyme levels (alkaline phosphatase) |
| THCA | cis | rs7267979 | 1 | rs6115168 | chr20:25372891 | FAM182B | chr20:25744102-25848786:- | -0.26 | -5.4 | 1.06E-7 | Liver enzyme levels (alkaline phosphatase) |
| THCA | cis | rs7267979 | 1 | rs6115168 | chr20:25372891 | NINL | chr20:25433338-25566153:- | 0.33 | 6.9 | 1.7E-11 | Liver enzyme levels (alkaline phosphatase) |